; When using this new tolopolgy, make sure you have included the required parameters ; (see http://swisssidechain.ch/MD/gromacs.html) [ DZDA ] ; azido-alanine [ atoms ] N NH1 -0.4700 0 HN H 0.3100 1 CA CT1 0.0700 2 HA HB 0.0900 3 CB CT2 0.0700 4 HB2 HA 0.0900 5 HB1 HA 0.0900 6 NG N=C -0.5600 7 ND =N= 0.6800 8 NE NAZT -0.3700 9 C C 0.5100 10 O O -0.5100 11 [ bonds ] N HN N CA C CA C +N CA HA CB CA O C CB HB2 ND NE NG ND CB HB1 NG CB [ impropers ] N -C CA HN C CA +N O [ cmap ] -C N CA C +N