; When using this new tolopolgy, make sure you have included the required parameters ; (see http://swisssidechain.ch/MD/gromacs.html) [ DAGM ] ; 5-methyl-arginine [ atoms ] N NH1 -0.4700 0 HN H 0.3100 1 CA CT1 0.0700 2 HA HB 0.0900 3 CB CT2 -0.1800 4 HB2 HA 0.0900 5 HB1 HA 0.0900 6 CG CT2 -0.1800 7 HG1 HA 0.0900 8 HG2 HA 0.0900 9 CD CT1 0.2900 10 HD HA 0.0900 11 NE1 NC2 -0.7000 12 HE1 HC 0.4400 13 CE2 CT3 -0.2700 14 HE21 HA 0.0900 15 HE22 HA 0.0900 16 HE23 HA 0.0900 17 CZ C 0.6400 18 NH2 NC2 -0.8000 19 HH22 HC 0.4600 20 HH21 HC 0.4600 21 NH1 NC2 -0.8000 22 HH12 HC 0.4600 23 HH11 HC 0.4600 24 C C 0.5100 25 O O -0.5100 26 [ bonds ] N HN N CA C CA C +N CA HA CB CA O C NH2 HH22 NH1 HH12 HH21 NH2 CZ NH2 CZ NH1 HH11 NH1 NE1 CZ HE1 NE1 CD NE1 CE2 HE21 CD HD CE2 CD CG CD HE22 CE2 HE23 CE2 CB HB2 CB HB1 CG CB HG1 CG HG2 CG [ impropers ] N -C CA HN C CA +N O CZ NH1 NH2 NE1 [ cmap ] -C N CA C +N