; When using this new tolopolgy, make sure you have included the required parameters ; (see http://swisssidechain.ch/MD/gromacs.html) [ MEN ] ; n-methyl asparagine [ atoms ] N NH1 -0.4700 0 HN H 0.3100 1 CA CT1 0.0700 2 HA HB 0.0900 3 CB CT2 -0.1200 4 HB1 HA 0.0900 5 HB2 HA 0.0900 6 CG CC 0.5700 7 OD1 O -0.5700 8 ND NH1 -0.7300 9 HD H 0.3700 10 CE CT3 0.0300 11 HE2 HA 0.0900 12 HE1 HA 0.0900 13 HE3 HA 0.0900 14 C C 0.5100 15 O O -0.5100 16 [ bonds ] N HN N CA C CA C +N CA HA CB CA O C CG CB HB1 CB HB2 CB ND CE HE2 CE HE1 CE HE3 CE OD1 CG ND CG ND HD [ impropers ] N -C CA HN C CA +N O CG CB ND OD1 ND CG HD CE [ cmap ] -C N CA C +N